PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG523200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 255aa    MW: 27456.5 Da    PI: 8.2058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG523200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.9e-1193140454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  Pavir.2NG523200.1.p  93 TKACREKIRRDKLNERFLELGAILEPG---KTPKMDKSAILNDAIRVVGEL 140
                          7789**********************9...9**************987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1380156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.59589140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.44E-892143No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1392154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-893140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-995146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1702.7E-4155187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MASPEGTTWV LDCSLMDDLA VAADFAAAPS GGFFRSAAPP MQPLGVQAPM QAVATAPAPS  60
PCVEISGSVD CDQGKKQTTN KRPRSESTAQ PSTKACREKI RRDKLNERFL ELGAILEPGK  120
TPKMDKSAIL NDAIRVVGEL RSEAKKLKDS NESLQEKIKE LKAEKNELRD EKQRLKAEKE  180
SLEQQIKFLN SRPSLVPHPP VIPASAFAAP QGPAAAGHKL MMPVIGYPGF PMWQFMPPSD  240
VDTSNDPKSC PPVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.153240.0leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957936.11e-152PREDICTED: transcription factor ILR3 isoform X2
SwissprotQ9FH371e-75ILR3_ARATH; Transcription factor ILR3
TrEMBLK3ZW981e-152K3ZW98_SETIT; Uncharacterized protein
STRINGSb02g035580.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-69bHLH family protein